miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|92955211|gb|EB589368.1|EB589368 TTTTTTGCTGCTTGTACTTGACAGTTTCGGTCCGGATTCCGGGATCTTGATTTTCGCGTTAATACGATTGATACGATGGC
CGACGTTGCTGCTGCCCCCAGTGTCGAGGTAAAGGAGCAGGCTCCTCCTGCCGATACGCCCGCCGCAGAGCCCGAGACCA
AGAACGGCGATGCCCAGAAGGAACCGGCTCCGGCCGCCGACGAGGGCACTGACTTCTCGAAGCAGGAGCGCGCCATAATC
CGTCAGGTGGAGTACTACTTTGGCGATGCGAATCTCAACCGGGACAAGTTCCTGCGCGAGCAGATCGGCAAGAGCGAGGA
CGGCTGGGTACCCCTCTCCGTGCTGATTACCTTCAAGCGGCTGGCTTCCCTGTCCACCGATTTCGAGGAGATTGTGGCGG
CCCTGAACAAATCCGAGGAGGGTCTGATCCAGATTAGCGAGGACAAGCAGAGCCTGCGCCGTCACCCAGAGCGTCCCATT
CCCGAGCACAACGAGGAGCGCCGCAAGGAGATCCAGGAACGCACTGCCTACGCCAAGGGCTTCCCATTGGAGTCGCAGAT
GACCGAGCTGTTGGACTTCTTTGCCAGCTACGACAAAGTAGTCAACATCACTATGCGCAAGCACTACGACAAGCCGACCA
AGTCGTACAAGTTCAAGGGCAGCATTTTCCTCACCTTCGAGACCAAGGAGCAGGCCACCGACTTCCTTGCGTAAGACAAA
GTCGTCTACCAGGAACGCGAACTGCTGC




Most similar to sp|P40796|LA_DROME

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P40796|LA_DROME La protein homolog OS=Drosophila melanogaster
           GN=La PE=1 SV=2
          Length = 390

 Score =  347 bits (891), Expect = 4e-95
 Identities = 177/225 (78%), Positives = 197/225 (87%), Gaps = 1/225 (0%)
 Frame = +1

Query: 76  MADVAAAPSVEVKEQXXXXXXXXXXXXXKNGDAQKEPAPAADEGTD-FSKQERAIIRQVE 252
           MA+VA  PSVE +E+             KNGDA+K+PAPAA+E    F+KQERAIIRQVE
Sbjct: 1   MAEVAETPSVEAQEEVAQPAEAQVLEA-KNGDAKKDPAPAAEEAAGGFTKQERAIIRQVE 59

Query: 253 YYFGDANLNRDKFLREQIGKSEDGWVPLSVLITFKRLASLSTDFEEIVAALNKSEEGLIQ 432
           YYFGDANLNRDKFLREQIGK+EDGWVPLSVL+TFKRLASLSTD  EIVAALNKSEEGL++
Sbjct: 60  YYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKSEEGLVE 119

Query: 433 ISEDKQSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLESQMTELLDFFASYDKVVNIT 612
           ISEDK SLRRHPERPIPEHNEERRKEIQERTAYAKGFPL+SQ++ELLDF A+YDKVVN+T
Sbjct: 120 ISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLDSQISELLDFAANYDKVVNLT 179

Query: 613 MRKHYDKPTKSYKFKGSIFLTFETKEQATDFLA*DKVVYQERELL 747
           MRKHYDKPTKSYKFKGSIFLTFETK+QA  FL  +K+VY+ERELL
Sbjct: 180 MRKHYDKPTKSYKFKGSIFLTFETKDQAKAFLEQEKIVYKERELL 224